Unfortunately, if you're in direct sun on 90°+ days a 13.5k btu rooftop a/c will likely struggle in the late afternoon hrs. to cool even a class B. Just to be sure though I'd check the temp of the cooled air coming from the plenum. The air coming out should be 16-22° cooler than the air going in (return air).
Insulating the glass, especially the windshield and any glass facing West may help.